PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1363
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 220aa    MW: 24459.8 Da    PI: 7.9246
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1363genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY245.51e-75111772170
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 
                  d++s s+q+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn+      ++ ++h+++s+  +  llee ++  ++++ +v+++ ++++s  
  Gh_A07G1363  11 DHVSPSDQLCYVHCNFCDTVLAVSVPRTSLFKTVTVRCGHCTNLLSVNMLGLLLPTTNQHHVGHSFFTPhnLLEEIRS--SATTNMVINQPNPNNSLM 106
                  7999************************************************************98766234555443..344444444444443333 PP

        YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +   e++p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Gh_A07G1363 107 P-P-IHGGVEDIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 177
                  2.3.357889****999******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.2E-7115177IPR006780YABBY protein
SuperFamilySSF470955.89E-8120170IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.2E-4126169IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSSSSAAFSP DHVSPSDQLC YVHCNFCDTV LAVSVPRTSL FKTVTVRCGH CTNLLSVNML  60
GLLLPTTNQH HVGHSFFTPH NLLEEIRSSA TTNMVINQPN PNNSLMPPIH GGVEDIPKPP  120
VVNRPPEKRQ RVPSAYNRFI KDEIQRIKAG NPDISHREAF SAAAKNWAHF PHIHFGLMPD  180
QPVKKTNVHQ QEGEEMVMKD GFFAPNNVGV TPYQTSPNYC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.190320.0boll| leaf| ovule
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483031.11e-162PREDICTED: axial regulator YABBY 1-like
SwissprotO221528e-95YAB1_ARATH; Axial regulator YABBY 1
TrEMBLA0A0B0P8971e-162A0A0B0P897_G
STRINGVIT_15s0048g00550.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22172877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-89YABBY family protein